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Molecular Biology & Genetic engineering

   Molecular Biology & Genetic engineering Department started its scientific activity by establishment of Stem Cell Technology Company in 2005.The main aims of our department are molecular biology studying and gene manipulation of stem cells along with providing molecular techniques required for other departments of the company. For these purposes, this department not only has extensively made use of young genius researchers but also has benefited from invaluable consultations with experts in stem cell biology.
Moreover, there has been creative collaboration between our center and national and International centers. These collaborations have brought brilliant results for not only our company but also for scientific community.
Currently, the Molecular biology and genetic engineering department has focused on particular research subjects that some of them have been described in detail as follows:
 

1. microRNA detection and quantification:
MicroRNAs regulate expression of their target mRNA through translation repression. Because of their short length, MicroRNAs are difficult to detect. We aimed to develop a method that could profile the expression of several MicroRNAs simultaneously by combining ligation of sized-coded probes and PCR amplification. The new method is able to distinguish between MicroRNAs that differ by only one nucleotide and also detects only mature MicroRNAs. Using this method, we generated unique MicroRNAs signatures for various cell and tissue samples.
 

2. Design and construction of tissue specific vector 
Expression vectors have a wide range of application in biomedical researches. In filed of stem cell biology, vectors that express reporter genes like green florescent protein or GFP are powerful tools for monitoring the process of differentiation.  Among our main objective in this department is design and construction of reporter vector in order to be used in our basic research. Currently, we are running a project in which we want to construct a neuron specific vector in order to monitor the differentiation of adult or embryonic stem cell to neurons.
 

3. MicroRNA profiling of mouse tissues and stem cells during aging
By Using a novel, simple and effective method which has been devised and optimized by our reserach team, we have been able to determine the expression profile of several miRNAs in tissue like bone marrow, brain and live of mouse. we are studying the diffrences in miRNA profile of two groups of young and old animals so that we could find those molecules which play crucial role in longevity and aging.
In this study our main aim is to find that microRNA which might be down-regulated or up-regulated during aging. Afterwards, we are going to manipulate microRNA involved in aging process in order to find key molecules which are responsible for aging.
 

4. Differentiation of stem cells through genetic manipulation
Alternative methods for differentiation of stem cells are a necessity in biology of these versatile cells. Differentiation factors induce cells to differentiate into a particular cell type by externally activating signaling pathways of cells. In an attempt to develop new method for differentiation of cells, we are trying to genetically manipulate cells and interfere with signaling pathways of cells. Therefore, we could determine the fate of cells by interfering with pathways which play important role in cell differentiation.

MicroRNA profiling technique

  MicroRNAs (miRNAs) are short (21–23 nucleotides) sequence-specific regulatory molecules found in all multi-cellular organisms. Over the last few years, several hundred conserved and nonconserved miRNAs have been identified and characterized in animals and plants using cloning and prediction strategies. Recent evidence indicates that they play important roles in a wide range of biological processes including developmental timing, differentiation, and growth control.Once identified, the temporal and spatial regulation of miRNA expression is generally investigated to better understand their biological function in vivo. To this end, numerous techniques for detecting miRNAs and other small RNAs have been developed including a variety of microarray-based and PCR-based approaches, rolling circle amplification, an ELISA-based assay, bead-based assays, single molecule detection, and the use of signal amplifying ribozymes. Many of these techniques require specialized and expensive equipment, and others involve multiple steps and an amplification reaction. To date, the most straightforward and widely used assay for small RNA detection has been traditional Northern blotting. Nevertheless, even with improvements in sensitivity provided by LNA substituted probes, Northern blotting requires relatively large amounts of starting material and involves multiple, timeconsuming handling steps. Therefore, we sought to develop an assay for small RNA detection that retained the simplicity of Northern blotting but eliminated its disadvantages. 

The developed assay takes advantage of liquid hybridization kinetics and circumvents the transfer, prehybridization, and washing steps required for Northern blotting.

Tissue specific reporter vectors for stem cell studiesTissue specific expression vectors have several important applications both for research purposes and clinical use. In the field of stem cell biology tissue specific vectors expressing a reporter gene such as green fluorescent protein (GFP) could be used in monitoring of the differentiation processes. They have also many applications in controlled gene expression for therapeutic purposes in both cell and gene therapeutic procedures. Design and construction of tissue specific reporter vectors with several applications in stem cell research is the main goal of our research team. Our current project is construction of neuron specific reporter vectors for real time monitoring of the differentiation of both embryonic and adult stem cells into mature neurons. For designing our neuron specific reporter constructs, we have used the regulative elements in the promoter region of the well-known neuron specific genes. The resulting constructs are also applicable in development of brain targeting vectors for use in cancer gene therapy. Development of the Stem State Specific Reporter Vectors is the future direction of our research team. These vectors are very important research tools in studies and optimization of the conditions for stem cell isolation, culture and maintenance and in research studies for simulating the microenvironment of the stem cell’s niches.
Arefian Ehsan
Head of Molecular Biology & Genetic Engineering Reserch Group
Ph.D. Student of Molecular Virology
M.Sc. in Molecular Virology
e.arefian@stemcellstech.com

Faridani  Omidreza
Ph.D.  in Cell Molecular Biology
Researcher
o.faridani@stemcellstech.com

Pourasgari   Farzaneh
Ph.D.  in Biochemistry
Researcher
f.Pourasgari@stemcellstech.com

Rahimpour Azam
Ph.D. Student of Medical Biotechnology
M.Sc. in Medical Biotechnology
Researcher
a.rahimpour@stemcellstech.com

Mobarra Zahra
Ms.c. Student of Biochemistry
B.Sc. in Microbiology
Researcher 
z.mobarra@stemcellstech.com  

Dehghanizadeh S
M.Sc. in Biotechnology
Researcher
s.dehghanizadeh@stemcellstech.com

Khoddami V
M.Sc. in Medical Biotechnology
Researcher
v.khoddami@stemcellstech.com

Jafarnejad   Seyed Mahdi
Ph.D. Student of Cell Molecular Biolog
M.Sc. in Genetics
Researcher 
m.jafarnejad@stemcellstech.com

Kiani Jafar
Ph.D. Student of Cell Molecular Biology
M.Sc. in Medical Biotechnology
Researcher 
j.kiani@stemcellstech.com

Aghaee bakhtiari  Seyed Hamid
M.Sc. in Medical Biotechnology
Researcher
h.aghaee@stemcellstech.com
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Jamshidi   Fatemeh  
M.Sc. in Animal Physiology
Researcher
f.jamshidi@stemcellstech.com